# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "phiper" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'phiper: Automated PhIP-seq Analysis and Reporting'
version: 0.4.1
doi: 10.32614/CRAN.package.phiper
abstract: Provides an end-to-end toolkit for Phage ImmunoPrecipitation- sequencing
  (PhIP-seq) data. Functions import raw peptide-sample count matrices, apply quality
  control filters, normalise library sizes, compute enrichment statistics and diversity
  metrics, and identify differentially enriched peptides or motifs. Results can be
  explored through tidy data frames, visualised with publication-ready ggplot2 graphics,
  or rendered into fully fledged HTML reports via R Markdown.
authors:
- family-names: Kolek
  given-names: Mateusz
  email: mati.kolek13@gmail.com
  orcid: https://orcid.org/0000-0001-6470-4830
repository: https://polymerase3.r-universe.dev
repository-code: https://github.com/Polymerase3/phiper
commit: 688367ea198d824e1db99e3025dfef7574553fdb
url: https://polymerase3.github.io/phiper/
date-released: '2026-04-15'
contact:
- family-names: Kolek
  given-names: Mateusz
  email: mati.kolek13@gmail.com
  orcid: https://orcid.org/0000-0001-6470-4830