R-universe - polymerase3 (Mateusz Franciszek Kolek)

phiper - Automated PhIP-seq Analysis and Reporting

Provides an end-to-end toolkit for Phage ImmunoPrecipitation- sequencing (PhIP-seq) data. Functions import raw peptide-sample count matrices, apply quality control filters, normalise library sizes, compute enrichment statistics and diversity metrics, and identify differentially enriched peptides or motifs. Results can be explored through tidy data frames, visualised with publication-ready ggplot2 graphics, or rendered into fully fledged HTML reports via R Markdown.

Last updated

cpp

5.65 score 2 stars 33 scripts

vecmatch - Generalized Propensity Score Estimation and Matching for Multiple Groups

Implements the Vector Matching algorithm to match multiple treatment groups based on previously estimated generalized propensity scores. The package includes tools for visualizing initial confounder imbalances, estimating treatment assignment probabilities using various methods, defining the common support region, performing matching across multiple groups, and evaluating matching quality. For more details, see Lopez and Gutman (2017) <doi:10.1214/17-STS612>.

Last updated

5.32 score 3 stars 5 scripts 286 downloads

phiperio - PhIP-Seq Data Import and Validation Tools

Provides utilities to import, validate, and manage PhIP-Seq datasets, including standardized conversion pipelines, data checks, and access to cached peptide metadata.

Last updated

4.35 score 5 stars 1 dependents 8 scripts